PhytophthoraV1, Main, Exploration, bibRecord, 000497

Genome analysis of a Bacillus subtilis strain reveals genetic mutations determining biocontrol properties.

Identifieur interne : 000497 ( Main/Exploration ); précédent : 000496; suivant : 000498

Genome analysis of a Bacillus subtilis strain reveals genetic mutations determining biocontrol properties.

Auteurs : Bettina B Ka [Hongrie] ; Lászl Manczinger [Hongrie] ; Sándor Kocsubé [Hongrie] ; Kadaikunnan Shine [Arabie saoudite] ; Naiyf S. Alharbi [Arabie saoudite] ; Jamal M. Khaled [Arabie saoudite] ; Martin Münsterkötter [Hongrie] ; Csaba Vágvölgyi [Hongrie, Arabie saoudite] ; Lászl Kredics [Hongrie]

Source :

World journal of microbiology & biotechnology [ 1573-0972 ] ; 2019.

RBID : pubmed:30868269

Descripteurs français

KwdFr :
- Agents de lutte biologique (métabolisme), Antibactériens (métabolisme), Antifongiques (métabolisme), Bacillus subtilis (classification), Bacillus subtilis (génétique), Bacillus subtilis (métabolisme), Champignons (effets des médicaments et des substances chimiques), Champignons (pathogénicité), Dipeptides (génétique), Dipeptides (métabolisme), Facteurs de transcription (génétique), Famille multigénique (MeSH), Gènes bactériens (génétique), Lipopeptides (génétique), Lipopeptides (métabolisme), Lycopersicon esculentum (microbiologie), Maladies des plantes (microbiologie), Mutation (MeSH), Métabolisme secondaire (génétique), Peptides cycliques (génétique), Phylogenèse (MeSH), Polymorphisme de nucléotide simple (MeSH), Séquence d'acides aminés (MeSH), Séquençage du génome entier (MeSH), Toxines bactériennes (génétique), Toxines bactériennes (métabolisme), Typage par séquençage multilocus (MeSH).
MESH :
- effets des médicaments et des substances chimiques : Champignons.
- génétique : Bacillus subtilis, Dipeptides, Facteurs de transcription, Gènes bactériens, Lipopeptides, Métabolisme secondaire, Peptides cycliques, Toxines bactériennes.
- microbiologie : Lycopersicon esculentum, Maladies des plantes.
- métabolisme : Agents de lutte biologique, Antibactériens, Antifongiques, Bacillus subtilis, Dipeptides, Lipopeptides, Toxines bactériennes.
- pathogénicité : Champignons.
- Famille multigénique, Mutation, Phylogenèse, Polymorphisme de nucléotide simple, Séquence d'acides aminés, Séquençage du génome entier, Typage par séquençage multilocus.

English descriptors

KwdEn :
- Amino Acid Sequence (MeSH), Anti-Bacterial Agents (metabolism), Antifungal Agents (metabolism), Bacillus subtilis (classification), Bacillus subtilis (genetics), Bacillus subtilis (metabolism), Bacterial Toxins (genetics), Bacterial Toxins (metabolism), Biological Control Agents (metabolism), Dipeptides (genetics), Dipeptides (metabolism), Fungi (drug effects), Fungi (pathogenicity), Genes, Bacterial (genetics), Lipopeptides (genetics), Lipopeptides (metabolism), Lycopersicon esculentum (microbiology), Multigene Family (MeSH), Multilocus Sequence Typing (MeSH), Mutation (MeSH), Peptides, Cyclic (genetics), Phylogeny (MeSH), Plant Diseases (microbiology), Polymorphism, Single Nucleotide (MeSH), Secondary Metabolism (genetics), Transcription Factors (genetics), Whole Genome Sequencing (MeSH).
MESH :
- chemical , genetics : Bacterial Toxins, Dipeptides, Lipopeptides, Peptides, Cyclic, Transcription Factors.
- chemical , metabolism : Anti-Bacterial Agents, Antifungal Agents, Bacterial Toxins, Biological Control Agents, Dipeptides, Lipopeptides.
- classification : Bacillus subtilis.
- drug effects : Fungi.
- genetics : Bacillus subtilis, Genes, Bacterial, Secondary Metabolism.
- metabolism : Bacillus subtilis.
- microbiology : Lycopersicon esculentum, Plant Diseases.
- pathogenicity : Fungi.
- Amino Acid Sequence, Multigene Family, Multilocus Sequence Typing, Mutation, Phylogeny, Polymorphism, Single Nucleotide, Whole Genome Sequencing.

Abstract

Several Bacillus strains are used as biocontrol agents, as they frequently have strong antagonistic effects against microbial plant pathogens. Bacillus strain SZMC 6179J, isolated from tomato rhizosphere, was previously shown to have excellent in vitro antagonistic properties against the most important fungal pathogens of tomato (Alternaria solani, Botrytis cinerea, Phytophthora infestans and Sclerotinia sclerotiorum) as well as several Fusarium species. Taxonomic investigations revealed that it is a member of the B. subtilis subsp. subtilis group and very closely related with the reference type strain B. subtilis subsp. subtilis 168. The sequenced genome of strain SZMC 6179J contains the genes responsible for the synthesis of the extracellular antibiotics surfactin, fengycin and bacilysin. Compared to strain 168, a prophage-like region is missing from the genome of SZMC 6179J, while there are 106 single nucleotide polymorphisms and 23 deletion-insertion polymorphisms. The high biocontrol potential of strain SZMC 6179J may results from a single base deletion in the sfp gene encoding the transcription factor of the surfactin and fengycin operons. Hypermutated regions reflecting short-time evolutionary processes could be detected in SZMC 6179J. The deletion-insertion polymorphism in the sfp gene and the detected hypermutations can be suggested as genetic determinants of biocontrol features in B. subtilis.

DOI: 10.1007/s11274-019-2625-x
PubMed: 30868269
PubMed Central: PMC6435635

Affiliations:

Arabie saoudite, Hongrie

Links toward previous steps (curation, corpus...)

to stream Main, to step Corpus: 000525
to stream Main, to step Curation: 000525

Le document en format XML

<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Genome analysis of a Bacillus subtilis strain reveals genetic mutations determining biocontrol properties.</title>
<author><name sortKey="B Ka, Bettina" sort="B Ka, Bettina" uniqKey="B Ka B" first="Bettina" last="B Ka">Bettina B Ka</name>
<affiliation wicri:level="1"><nlm:affiliation>Department of Microbiology, Faculty of Science and Informatics, University of Szeged, Közép fasor 52, Szeged, 6726, Hungary.</nlm:affiliation>
<country xml:lang="fr">Hongrie</country>
<wicri:regionArea>Department of Microbiology, Faculty of Science and Informatics, University of Szeged, Közép fasor 52, Szeged, 6726</wicri:regionArea>
<wicri:noRegion>6726</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Manczinger, Laszl" sort="Manczinger, Laszl" uniqKey="Manczinger L" first="Lászl" last="Manczinger">Lászl Manczinger</name>
<affiliation wicri:level="1"><nlm:affiliation>Department of Microbiology, Faculty of Science and Informatics, University of Szeged, Közép fasor 52, Szeged, 6726, Hungary.</nlm:affiliation>
<country xml:lang="fr">Hongrie</country>
<wicri:regionArea>Department of Microbiology, Faculty of Science and Informatics, University of Szeged, Közép fasor 52, Szeged, 6726</wicri:regionArea>
<wicri:noRegion>6726</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Kocsube, Sandor" sort="Kocsube, Sandor" uniqKey="Kocsube S" first="Sándor" last="Kocsubé">Sándor Kocsubé</name>
<affiliation wicri:level="1"><nlm:affiliation>Department of Microbiology, Faculty of Science and Informatics, University of Szeged, Közép fasor 52, Szeged, 6726, Hungary.</nlm:affiliation>
<country xml:lang="fr">Hongrie</country>
<wicri:regionArea>Department of Microbiology, Faculty of Science and Informatics, University of Szeged, Közép fasor 52, Szeged, 6726</wicri:regionArea>
<wicri:noRegion>6726</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Shine, Kadaikunnan" sort="Shine, Kadaikunnan" uniqKey="Shine K" first="Kadaikunnan" last="Shine">Kadaikunnan Shine</name>
<affiliation wicri:level="1"><nlm:affiliation>Department of Botany and Microbiology, College of Science, King Saud University, Riyadh, 11451, Saudi Arabia.</nlm:affiliation>
<country xml:lang="fr">Arabie saoudite</country>
<wicri:regionArea>Department of Botany and Microbiology, College of Science, King Saud University, Riyadh, 11451</wicri:regionArea>
<wicri:noRegion>11451</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Alharbi, Naiyf S" sort="Alharbi, Naiyf S" uniqKey="Alharbi N" first="Naiyf S" last="Alharbi">Naiyf S. Alharbi</name>
<affiliation wicri:level="1"><nlm:affiliation>Department of Botany and Microbiology, College of Science, King Saud University, Riyadh, 11451, Saudi Arabia.</nlm:affiliation>
<country xml:lang="fr">Arabie saoudite</country>
<wicri:regionArea>Department of Botany and Microbiology, College of Science, King Saud University, Riyadh, 11451</wicri:regionArea>
<wicri:noRegion>11451</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Khaled, Jamal M" sort="Khaled, Jamal M" uniqKey="Khaled J" first="Jamal M" last="Khaled">Jamal M. Khaled</name>
<affiliation wicri:level="1"><nlm:affiliation>Department of Botany and Microbiology, College of Science, King Saud University, Riyadh, 11451, Saudi Arabia.</nlm:affiliation>
<country xml:lang="fr">Arabie saoudite</country>
<wicri:regionArea>Department of Botany and Microbiology, College of Science, King Saud University, Riyadh, 11451</wicri:regionArea>
<wicri:noRegion>11451</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Munsterkotter, Martin" sort="Munsterkotter, Martin" uniqKey="Munsterkotter M" first="Martin" last="Münsterkötter">Martin Münsterkötter</name>
<affiliation wicri:level="1"><nlm:affiliation>Functional Genomics and Bioinformatics Group, Research Center for Forestry and Wood Industry, University of Sopron, Bajcsy-Zsilinszky u. 4, Sopron, 9401, Hungary.</nlm:affiliation>
<country xml:lang="fr">Hongrie</country>
<wicri:regionArea>Functional Genomics and Bioinformatics Group, Research Center for Forestry and Wood Industry, University of Sopron, Bajcsy-Zsilinszky u. 4, Sopron, 9401</wicri:regionArea>
<wicri:noRegion>9401</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Vagvolgyi, Csaba" sort="Vagvolgyi, Csaba" uniqKey="Vagvolgyi C" first="Csaba" last="Vágvölgyi">Csaba Vágvölgyi</name>
<affiliation wicri:level="1"><nlm:affiliation>Department of Microbiology, Faculty of Science and Informatics, University of Szeged, Közép fasor 52, Szeged, 6726, Hungary.</nlm:affiliation>
<country xml:lang="fr">Hongrie</country>
<wicri:regionArea>Department of Microbiology, Faculty of Science and Informatics, University of Szeged, Közép fasor 52, Szeged, 6726</wicri:regionArea>
<wicri:noRegion>6726</wicri:noRegion>
</affiliation>
<affiliation wicri:level="1"><nlm:affiliation>Department of Botany and Microbiology, College of Science, King Saud University, Riyadh, 11451, Saudi Arabia.</nlm:affiliation>
<country xml:lang="fr">Arabie saoudite</country>
<wicri:regionArea>Department of Botany and Microbiology, College of Science, King Saud University, Riyadh, 11451</wicri:regionArea>
<wicri:noRegion>11451</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Kredics, Laszl" sort="Kredics, Laszl" uniqKey="Kredics L" first="Lászl" last="Kredics">Lászl Kredics</name>
<affiliation wicri:level="1"><nlm:affiliation>Department of Microbiology, Faculty of Science and Informatics, University of Szeged, Közép fasor 52, Szeged, 6726, Hungary. kredics@bio.u-szeged.hu.</nlm:affiliation>
<country xml:lang="fr">Hongrie</country>
<wicri:regionArea>Department of Microbiology, Faculty of Science and Informatics, University of Szeged, Közép fasor 52, Szeged, 6726</wicri:regionArea>
<wicri:noRegion>6726</wicri:noRegion>
</affiliation>
</author>
</titleStmt>
<publicationStmt><idno type="wicri:source">PubMed</idno>
<date when="2019">2019</date>
<idno type="RBID">pubmed:30868269</idno>
<idno type="pmid">30868269</idno>
<idno type="doi">10.1007/s11274-019-2625-x</idno>
<idno type="pmc">PMC6435635</idno>
<idno type="wicri:Area/Main/Corpus">000525</idno>
<idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">000525</idno>
<idno type="wicri:Area/Main/Curation">000525</idno>
<idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Curation">000525</idno>
<idno type="wicri:Area/Main/Exploration">000525</idno>
</publicationStmt>
<sourceDesc><biblStruct><analytic><title xml:lang="en">Genome analysis of a Bacillus subtilis strain reveals genetic mutations determining biocontrol properties.</title>
<author><name sortKey="B Ka, Bettina" sort="B Ka, Bettina" uniqKey="B Ka B" first="Bettina" last="B Ka">Bettina B Ka</name>
<affiliation wicri:level="1"><nlm:affiliation>Department of Microbiology, Faculty of Science and Informatics, University of Szeged, Közép fasor 52, Szeged, 6726, Hungary.</nlm:affiliation>
<country xml:lang="fr">Hongrie</country>
<wicri:regionArea>Department of Microbiology, Faculty of Science and Informatics, University of Szeged, Közép fasor 52, Szeged, 6726</wicri:regionArea>
<wicri:noRegion>6726</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Manczinger, Laszl" sort="Manczinger, Laszl" uniqKey="Manczinger L" first="Lászl" last="Manczinger">Lászl Manczinger</name>
<affiliation wicri:level="1"><nlm:affiliation>Department of Microbiology, Faculty of Science and Informatics, University of Szeged, Közép fasor 52, Szeged, 6726, Hungary.</nlm:affiliation>
<country xml:lang="fr">Hongrie</country>
<wicri:regionArea>Department of Microbiology, Faculty of Science and Informatics, University of Szeged, Közép fasor 52, Szeged, 6726</wicri:regionArea>
<wicri:noRegion>6726</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Kocsube, Sandor" sort="Kocsube, Sandor" uniqKey="Kocsube S" first="Sándor" last="Kocsubé">Sándor Kocsubé</name>
<affiliation wicri:level="1"><nlm:affiliation>Department of Microbiology, Faculty of Science and Informatics, University of Szeged, Közép fasor 52, Szeged, 6726, Hungary.</nlm:affiliation>
<country xml:lang="fr">Hongrie</country>
<wicri:regionArea>Department of Microbiology, Faculty of Science and Informatics, University of Szeged, Közép fasor 52, Szeged, 6726</wicri:regionArea>
<wicri:noRegion>6726</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Shine, Kadaikunnan" sort="Shine, Kadaikunnan" uniqKey="Shine K" first="Kadaikunnan" last="Shine">Kadaikunnan Shine</name>
<affiliation wicri:level="1"><nlm:affiliation>Department of Botany and Microbiology, College of Science, King Saud University, Riyadh, 11451, Saudi Arabia.</nlm:affiliation>
<country xml:lang="fr">Arabie saoudite</country>
<wicri:regionArea>Department of Botany and Microbiology, College of Science, King Saud University, Riyadh, 11451</wicri:regionArea>
<wicri:noRegion>11451</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Alharbi, Naiyf S" sort="Alharbi, Naiyf S" uniqKey="Alharbi N" first="Naiyf S" last="Alharbi">Naiyf S. Alharbi</name>
<affiliation wicri:level="1"><nlm:affiliation>Department of Botany and Microbiology, College of Science, King Saud University, Riyadh, 11451, Saudi Arabia.</nlm:affiliation>
<country xml:lang="fr">Arabie saoudite</country>
<wicri:regionArea>Department of Botany and Microbiology, College of Science, King Saud University, Riyadh, 11451</wicri:regionArea>
<wicri:noRegion>11451</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Khaled, Jamal M" sort="Khaled, Jamal M" uniqKey="Khaled J" first="Jamal M" last="Khaled">Jamal M. Khaled</name>
<affiliation wicri:level="1"><nlm:affiliation>Department of Botany and Microbiology, College of Science, King Saud University, Riyadh, 11451, Saudi Arabia.</nlm:affiliation>
<country xml:lang="fr">Arabie saoudite</country>
<wicri:regionArea>Department of Botany and Microbiology, College of Science, King Saud University, Riyadh, 11451</wicri:regionArea>
<wicri:noRegion>11451</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Munsterkotter, Martin" sort="Munsterkotter, Martin" uniqKey="Munsterkotter M" first="Martin" last="Münsterkötter">Martin Münsterkötter</name>
<affiliation wicri:level="1"><nlm:affiliation>Functional Genomics and Bioinformatics Group, Research Center for Forestry and Wood Industry, University of Sopron, Bajcsy-Zsilinszky u. 4, Sopron, 9401, Hungary.</nlm:affiliation>
<country xml:lang="fr">Hongrie</country>
<wicri:regionArea>Functional Genomics and Bioinformatics Group, Research Center for Forestry and Wood Industry, University of Sopron, Bajcsy-Zsilinszky u. 4, Sopron, 9401</wicri:regionArea>
<wicri:noRegion>9401</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Vagvolgyi, Csaba" sort="Vagvolgyi, Csaba" uniqKey="Vagvolgyi C" first="Csaba" last="Vágvölgyi">Csaba Vágvölgyi</name>
<affiliation wicri:level="1"><nlm:affiliation>Department of Microbiology, Faculty of Science and Informatics, University of Szeged, Közép fasor 52, Szeged, 6726, Hungary.</nlm:affiliation>
<country xml:lang="fr">Hongrie</country>
<wicri:regionArea>Department of Microbiology, Faculty of Science and Informatics, University of Szeged, Közép fasor 52, Szeged, 6726</wicri:regionArea>
<wicri:noRegion>6726</wicri:noRegion>
</affiliation>
<affiliation wicri:level="1"><nlm:affiliation>Department of Botany and Microbiology, College of Science, King Saud University, Riyadh, 11451, Saudi Arabia.</nlm:affiliation>
<country xml:lang="fr">Arabie saoudite</country>
<wicri:regionArea>Department of Botany and Microbiology, College of Science, King Saud University, Riyadh, 11451</wicri:regionArea>
<wicri:noRegion>11451</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Kredics, Laszl" sort="Kredics, Laszl" uniqKey="Kredics L" first="Lászl" last="Kredics">Lászl Kredics</name>
<affiliation wicri:level="1"><nlm:affiliation>Department of Microbiology, Faculty of Science and Informatics, University of Szeged, Közép fasor 52, Szeged, 6726, Hungary. kredics@bio.u-szeged.hu.</nlm:affiliation>
<country xml:lang="fr">Hongrie</country>
<wicri:regionArea>Department of Microbiology, Faculty of Science and Informatics, University of Szeged, Közép fasor 52, Szeged, 6726</wicri:regionArea>
<wicri:noRegion>6726</wicri:noRegion>
</affiliation>
</author>
</analytic>
<series><title level="j">World journal of microbiology & biotechnology</title>
<idno type="eISSN">1573-0972</idno>
<imprint><date when="2019" type="published">2019</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Amino Acid Sequence (MeSH)</term>
<term>Anti-Bacterial Agents (metabolism)</term>
<term>Antifungal Agents (metabolism)</term>
<term>Bacillus subtilis (classification)</term>
<term>Bacillus subtilis (genetics)</term>
<term>Bacillus subtilis (metabolism)</term>
<term>Bacterial Toxins (genetics)</term>
<term>Bacterial Toxins (metabolism)</term>
<term>Biological Control Agents (metabolism)</term>
<term>Dipeptides (genetics)</term>
<term>Dipeptides (metabolism)</term>
<term>Fungi (drug effects)</term>
<term>Fungi (pathogenicity)</term>
<term>Genes, Bacterial (genetics)</term>
<term>Lipopeptides (genetics)</term>
<term>Lipopeptides (metabolism)</term>
<term>Lycopersicon esculentum (microbiology)</term>
<term>Multigene Family (MeSH)</term>
<term>Multilocus Sequence Typing (MeSH)</term>
<term>Mutation (MeSH)</term>
<term>Peptides, Cyclic (genetics)</term>
<term>Phylogeny (MeSH)</term>
<term>Plant Diseases (microbiology)</term>
<term>Polymorphism, Single Nucleotide (MeSH)</term>
<term>Secondary Metabolism (genetics)</term>
<term>Transcription Factors (genetics)</term>
<term>Whole Genome Sequencing (MeSH)</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr"><term>Agents de lutte biologique (métabolisme)</term>
<term>Antibactériens (métabolisme)</term>
<term>Antifongiques (métabolisme)</term>
<term>Bacillus subtilis (classification)</term>
<term>Bacillus subtilis (génétique)</term>
<term>Bacillus subtilis (métabolisme)</term>
<term>Champignons (effets des médicaments et des substances chimiques)</term>
<term>Champignons (pathogénicité)</term>
<term>Dipeptides (génétique)</term>
<term>Dipeptides (métabolisme)</term>
<term>Facteurs de transcription (génétique)</term>
<term>Famille multigénique (MeSH)</term>
<term>Gènes bactériens (génétique)</term>
<term>Lipopeptides (génétique)</term>
<term>Lipopeptides (métabolisme)</term>
<term>Lycopersicon esculentum (microbiologie)</term>
<term>Maladies des plantes (microbiologie)</term>
<term>Mutation (MeSH)</term>
<term>Métabolisme secondaire (génétique)</term>
<term>Peptides cycliques (génétique)</term>
<term>Phylogenèse (MeSH)</term>
<term>Polymorphisme de nucléotide simple (MeSH)</term>
<term>Séquence d'acides aminés (MeSH)</term>
<term>Séquençage du génome entier (MeSH)</term>
<term>Toxines bactériennes (génétique)</term>
<term>Toxines bactériennes (métabolisme)</term>
<term>Typage par séquençage multilocus (MeSH)</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Bacterial Toxins</term>
<term>Dipeptides</term>
<term>Lipopeptides</term>
<term>Peptides, Cyclic</term>
<term>Transcription Factors</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en"><term>Anti-Bacterial Agents</term>
<term>Antifungal Agents</term>
<term>Bacterial Toxins</term>
<term>Biological Control Agents</term>
<term>Dipeptides</term>
<term>Lipopeptides</term>
</keywords>
<keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Bacillus subtilis</term>
</keywords>
<keywords scheme="MESH" qualifier="drug effects" xml:lang="en"><term>Fungi</term>
</keywords>
<keywords scheme="MESH" qualifier="effets des médicaments et des substances chimiques" xml:lang="fr"><term>Champignons</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Bacillus subtilis</term>
<term>Genes, Bacterial</term>
<term>Secondary Metabolism</term>
</keywords>
<keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Bacillus subtilis</term>
<term>Dipeptides</term>
<term>Facteurs de transcription</term>
<term>Gènes bactériens</term>
<term>Lipopeptides</term>
<term>Métabolisme secondaire</term>
<term>Peptides cycliques</term>
<term>Toxines bactériennes</term>
</keywords>
<keywords scheme="MESH" qualifier="metabolism" xml:lang="en"><term>Bacillus subtilis</term>
</keywords>
<keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr"><term>Lycopersicon esculentum</term>
<term>Maladies des plantes</term>
</keywords>
<keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Lycopersicon esculentum</term>
<term>Plant Diseases</term>
</keywords>
<keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr"><term>Agents de lutte biologique</term>
<term>Antibactériens</term>
<term>Antifongiques</term>
<term>Bacillus subtilis</term>
<term>Dipeptides</term>
<term>Lipopeptides</term>
<term>Toxines bactériennes</term>
</keywords>
<keywords scheme="MESH" qualifier="pathogenicity" xml:lang="en"><term>Fungi</term>
</keywords>
<keywords scheme="MESH" qualifier="pathogénicité" xml:lang="fr"><term>Champignons</term>
</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Amino Acid Sequence</term>
<term>Multigene Family</term>
<term>Multilocus Sequence Typing</term>
<term>Mutation</term>
<term>Phylogeny</term>
<term>Polymorphism, Single Nucleotide</term>
<term>Whole Genome Sequencing</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr"><term>Famille multigénique</term>
<term>Mutation</term>
<term>Phylogenèse</term>
<term>Polymorphisme de nucléotide simple</term>
<term>Séquence d'acides aminés</term>
<term>Séquençage du génome entier</term>
<term>Typage par séquençage multilocus</term>
</keywords>
</textClass>
</profileDesc>
</teiHeader>
<front><div type="abstract" xml:lang="en">Several Bacillus strains are used as biocontrol agents, as they frequently have strong antagonistic effects against microbial plant pathogens. Bacillus strain SZMC 6179J, isolated from tomato rhizosphere, was previously shown to have excellent in vitro antagonistic properties against the most important fungal pathogens of tomato (Alternaria solani, Botrytis cinerea, Phytophthora infestans and Sclerotinia sclerotiorum) as well as several Fusarium species. Taxonomic investigations revealed that it is a member of the B. subtilis subsp. subtilis group and very closely related with the reference type strain B. subtilis subsp. subtilis 168. The sequenced genome of strain SZMC 6179J contains the genes responsible for the synthesis of the extracellular antibiotics surfactin, fengycin and bacilysin. Compared to strain 168, a prophage-like region is missing from the genome of SZMC 6179J, while there are 106 single nucleotide polymorphisms and 23 deletion-insertion polymorphisms. The high biocontrol potential of strain SZMC 6179J may results from a single base deletion in the sfp gene encoding the transcription factor of the surfactin and fengycin operons. Hypermutated regions reflecting short-time evolutionary processes could be detected in SZMC 6179J. The deletion-insertion polymorphism in the sfp gene and the detected hypermutations can be suggested as genetic determinants of biocontrol features in B. subtilis.</div>
</front>
</TEI>
<pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">30868269</PMID>
<DateCompleted><Year>2019</Year>
<Month>03</Month>
<Day>20</Day>
</DateCompleted>
<DateRevised><Year>2020</Year>
<Month>02</Month>
<Day>25</Day>
</DateRevised>
<Article PubModel="Electronic"><Journal><ISSN IssnType="Electronic">1573-0972</ISSN>
<JournalIssue CitedMedium="Internet"><Volume>35</Volume>
<Issue>3</Issue>
<PubDate><Year>2019</Year>
<Month>Mar</Month>
<Day>13</Day>
</PubDate>
</JournalIssue>
<Title>World journal of microbiology & biotechnology</Title>
<ISOAbbreviation>World J Microbiol Biotechnol</ISOAbbreviation>
</Journal>
<ArticleTitle>Genome analysis of a Bacillus subtilis strain reveals genetic mutations determining biocontrol properties.</ArticleTitle>
<Pagination><MedlinePgn>52</MedlinePgn>
</Pagination>
<ELocationID EIdType="doi" ValidYN="Y">10.1007/s11274-019-2625-x</ELocationID>
<Abstract><AbstractText>Several Bacillus strains are used as biocontrol agents, as they frequently have strong antagonistic effects against microbial plant pathogens. Bacillus strain SZMC 6179J, isolated from tomato rhizosphere, was previously shown to have excellent in vitro antagonistic properties against the most important fungal pathogens of tomato (Alternaria solani, Botrytis cinerea, Phytophthora infestans and Sclerotinia sclerotiorum) as well as several Fusarium species. Taxonomic investigations revealed that it is a member of the B. subtilis subsp. subtilis group and very closely related with the reference type strain B. subtilis subsp. subtilis 168. The sequenced genome of strain SZMC 6179J contains the genes responsible for the synthesis of the extracellular antibiotics surfactin, fengycin and bacilysin. Compared to strain 168, a prophage-like region is missing from the genome of SZMC 6179J, while there are 106 single nucleotide polymorphisms and 23 deletion-insertion polymorphisms. The high biocontrol potential of strain SZMC 6179J may results from a single base deletion in the sfp gene encoding the transcription factor of the surfactin and fengycin operons. Hypermutated regions reflecting short-time evolutionary processes could be detected in SZMC 6179J. The deletion-insertion polymorphism in the sfp gene and the detected hypermutations can be suggested as genetic determinants of biocontrol features in B. subtilis.</AbstractText>
</Abstract>
<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Bóka</LastName>
<ForeName>Bettina</ForeName>
<Initials>B</Initials>
<AffiliationInfo><Affiliation>Department of Microbiology, Faculty of Science and Informatics, University of Szeged, Közép fasor 52, Szeged, 6726, Hungary.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Manczinger</LastName>
<ForeName>László</ForeName>
<Initials>L</Initials>
<Identifier Source="ORCID">http://orcid.org/0000-0003-1031-7522</Identifier>
<AffiliationInfo><Affiliation>Department of Microbiology, Faculty of Science and Informatics, University of Szeged, Közép fasor 52, Szeged, 6726, Hungary.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Kocsubé</LastName>
<ForeName>Sándor</ForeName>
<Initials>S</Initials>
<Identifier Source="ORCID">http://orcid.org/0000-0001-7839-0510</Identifier>
<AffiliationInfo><Affiliation>Department of Microbiology, Faculty of Science and Informatics, University of Szeged, Közép fasor 52, Szeged, 6726, Hungary.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Shine</LastName>
<ForeName>Kadaikunnan</ForeName>
<Initials>K</Initials>
<Identifier Source="ORCID">http://orcid.org/0000-0001-7018-5379</Identifier>
<AffiliationInfo><Affiliation>Department of Botany and Microbiology, College of Science, King Saud University, Riyadh, 11451, Saudi Arabia.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Alharbi</LastName>
<ForeName>Naiyf S</ForeName>
<Initials>NS</Initials>
<Identifier Source="ORCID">http://orcid.org/0000-0001-5820-9649</Identifier>
<AffiliationInfo><Affiliation>Department of Botany and Microbiology, College of Science, King Saud University, Riyadh, 11451, Saudi Arabia.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Khaled</LastName>
<ForeName>Jamal M</ForeName>
<Initials>JM</Initials>
<AffiliationInfo><Affiliation>Department of Botany and Microbiology, College of Science, King Saud University, Riyadh, 11451, Saudi Arabia.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Münsterkötter</LastName>
<ForeName>Martin</ForeName>
<Initials>M</Initials>
<Identifier Source="ORCID">http://orcid.org/0000-0002-0044-2381</Identifier>
<AffiliationInfo><Affiliation>Functional Genomics and Bioinformatics Group, Research Center for Forestry and Wood Industry, University of Sopron, Bajcsy-Zsilinszky u. 4, Sopron, 9401, Hungary.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Vágvölgyi</LastName>
<ForeName>Csaba</ForeName>
<Initials>C</Initials>
<Identifier Source="ORCID">http://orcid.org/0000-0003-0009-7773</Identifier>
<AffiliationInfo><Affiliation>Department of Microbiology, Faculty of Science and Informatics, University of Szeged, Közép fasor 52, Szeged, 6726, Hungary.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>Department of Botany and Microbiology, College of Science, King Saud University, Riyadh, 11451, Saudi Arabia.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Kredics</LastName>
<ForeName>László</ForeName>
<Initials>L</Initials>
<Identifier Source="ORCID">http://orcid.org/0000-0002-8837-3973</Identifier>
<AffiliationInfo><Affiliation>Department of Microbiology, Faculty of Science and Informatics, University of Szeged, Közép fasor 52, Szeged, 6726, Hungary. kredics@bio.u-szeged.hu.</Affiliation>
</AffiliationInfo>
</Author>
</AuthorList>
<Language>eng</Language>
<GrantList CompleteYN="Y"><Grant><GrantID>GINOP-2.3.2-15-2016-00052</GrantID>
<Agency>Horizon 2020</Agency>
<Country></Country>
</Grant>
<Grant><GrantID>International Scientific Partnership Program</GrantID>
<Agency>King Saud University</Agency>
<Country></Country>
</Grant>
<Grant><GrantID>János Bolyai Research Scholarship</GrantID>
<Agency>Magyar Tudományos Akadémia</Agency>
<Country></Country>
</Grant>
</GrantList>
<PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType>
</PublicationTypeList>
<ArticleDate DateType="Electronic"><Year>2019</Year>
<Month>03</Month>
<Day>13</Day>
</ArticleDate>
</Article>
<MedlineJournalInfo><Country>Germany</Country>
<MedlineTA>World J Microbiol Biotechnol</MedlineTA>
<NlmUniqueID>9012472</NlmUniqueID>
<ISSNLinking>0959-3993</ISSNLinking>
</MedlineJournalInfo>
<ChemicalList><Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D000900">Anti-Bacterial Agents</NameOfSubstance>
</Chemical>
<Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D000935">Antifungal Agents</NameOfSubstance>
</Chemical>
<Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D001427">Bacterial Toxins</NameOfSubstance>
</Chemical>
<Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D061046">Biological Control Agents</NameOfSubstance>
</Chemical>
<Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D004151">Dipeptides</NameOfSubstance>
</Chemical>
<Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D055666">Lipopeptides</NameOfSubstance>
</Chemical>
<Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D010456">Peptides, Cyclic</NameOfSubstance>
</Chemical>
<Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D014157">Transcription Factors</NameOfSubstance>
</Chemical>
<Chemical><RegistryNumber>102577-03-7</RegistryNumber>
<NameOfSubstance UI="C049972">fengycin</NameOfSubstance>
</Chemical>
<Chemical><RegistryNumber>24730-31-2</RegistryNumber>
<NameOfSubstance UI="C009365">surfactin peptide</NameOfSubstance>
</Chemical>
<Chemical><RegistryNumber>90R5Q4BW17</RegistryNumber>
<NameOfSubstance UI="C006674">bacilysin</NameOfSubstance>
</Chemical>
</ChemicalList>
<CitationSubset>IM</CitationSubset>
<MeshHeadingList><MeshHeading><DescriptorName UI="D000595" MajorTopicYN="N">Amino Acid Sequence</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D000900" MajorTopicYN="N">Anti-Bacterial Agents</DescriptorName>
<QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D000935" MajorTopicYN="N">Antifungal Agents</DescriptorName>
<QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D001412" MajorTopicYN="N">Bacillus subtilis</DescriptorName>
<QualifierName UI="Q000145" MajorTopicYN="N">classification</QualifierName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
<QualifierName UI="Q000378" MajorTopicYN="Y">metabolism</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D001427" MajorTopicYN="N">Bacterial Toxins</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
<QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D061046" MajorTopicYN="N">Biological Control Agents</DescriptorName>
<QualifierName UI="Q000378" MajorTopicYN="Y">metabolism</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D004151" MajorTopicYN="N">Dipeptides</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
<QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D005658" MajorTopicYN="N">Fungi</DescriptorName>
<QualifierName UI="Q000187" MajorTopicYN="N">drug effects</QualifierName>
<QualifierName UI="Q000472" MajorTopicYN="N">pathogenicity</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D005798" MajorTopicYN="N">Genes, Bacterial</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D055666" MajorTopicYN="N">Lipopeptides</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
<QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D018551" MajorTopicYN="N">Lycopersicon esculentum</DescriptorName>
<QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D005810" MajorTopicYN="N">Multigene Family</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D058885" MajorTopicYN="N">Multilocus Sequence Typing</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D009154" MajorTopicYN="Y">Mutation</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D010456" MajorTopicYN="N">Peptides, Cyclic</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D010802" MajorTopicYN="N">Phylogeny</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D010935" MajorTopicYN="N">Plant Diseases</DescriptorName>
<QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D020641" MajorTopicYN="N">Polymorphism, Single Nucleotide</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D064210" MajorTopicYN="N">Secondary Metabolism</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D014157" MajorTopicYN="N">Transcription Factors</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D000073336" MajorTopicYN="N">Whole Genome Sequencing</DescriptorName>
</MeshHeading>
</MeshHeadingList>
<KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Bacillus subtilis</Keyword>
<Keyword MajorTopicYN="N">Biocontrol</Keyword>
<Keyword MajorTopicYN="N">Fengycin</Keyword>
<Keyword MajorTopicYN="N">Genome analysis</Keyword>
<Keyword MajorTopicYN="N">Hypermutation</Keyword>
<Keyword MajorTopicYN="N">Surfactin</Keyword>
</KeywordList>
</MedlineCitation>
<PubmedData><History><PubMedPubDate PubStatus="received"><Year>2018</Year>
<Month>12</Month>
<Day>21</Day>
</PubMedPubDate>
<PubMedPubDate PubStatus="accepted"><Year>2019</Year>
<Month>03</Month>
<Day>01</Day>
</PubMedPubDate>
<PubMedPubDate PubStatus="entrez"><Year>2019</Year>
<Month>3</Month>
<Day>15</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="pubmed"><Year>2019</Year>
<Month>3</Month>
<Day>15</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="medline"><Year>2019</Year>
<Month>3</Month>
<Day>21</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
</History>
<PublicationStatus>epublish</PublicationStatus>
<ArticleIdList><ArticleId IdType="pubmed">30868269</ArticleId>
<ArticleId IdType="doi">10.1007/s11274-019-2625-x</ArticleId>
<ArticleId IdType="pii">10.1007/s11274-019-2625-x</ArticleId>
<ArticleId IdType="pmc">PMC6435635</ArticleId>
</ArticleIdList>
<ReferenceList><Reference><Citation>Appl Microbiol Biotechnol. 1999 May;51(5):553-63</Citation>
<ArticleIdList><ArticleId IdType="pubmed">10390813</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>J Comput Biol. 2000 Feb-Apr;7(1-2):203-14</Citation>
<ArticleIdList><ArticleId IdType="pubmed">10890397</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Chem Rev. 1997 Nov 10;97(7):2651-2674</Citation>
<ArticleIdList><ArticleId IdType="pubmed">11851476</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Mol Microbiol. 2005 May;56(4):845-57</Citation>
<ArticleIdList><ArticleId IdType="pubmed">15853875</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>J Biosci Bioeng. 2000;89(6):515-21</Citation>
<ArticleIdList><ArticleId IdType="pubmed">16232790</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>J Bacteriol. 2008 Nov;190(21):6983-95</Citation>
<ArticleIdList><ArticleId IdType="pubmed">18723616</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Phytopathology. 2004 Nov;94(11):1259-66</Citation>
<ArticleIdList><ArticleId IdType="pubmed">18944464</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Bioinformatics. 2009 Jan 1;25(1):119-20</Citation>
<ArticleIdList><ArticleId IdType="pubmed">18990721</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>FEMS Microbiol Lett. 1991 Jun 1;65(1):9-13</Citation>
<ArticleIdList><ArticleId IdType="pubmed">1908396</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Mol Plant Microbe Interact. 2009 Apr;22(4):456-68</Citation>
<ArticleIdList><ArticleId IdType="pubmed">19271960</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>FEMS Microbiol Ecol. 2004 May 1;48(2):249-59</Citation>
<ArticleIdList><ArticleId IdType="pubmed">19712408</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>J Appl Microbiol. 2010 Aug;109(2):480-91</Citation>
<ArticleIdList><ArticleId IdType="pubmed">20148996</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Am J Bot. 1947 Jun;34(6):345-8</Citation>
<ArticleIdList><ArticleId IdType="pubmed">20252518</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>J Bacteriol. 2010 Jul;192(13):3321-8</Citation>
<ArticleIdList><ArticleId IdType="pubmed">20435731</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>BMC Bioinformatics. 2010 Dec 10;11:595</Citation>
<ArticleIdList><ArticleId IdType="pubmed">21143983</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>J Bacteriol. 2011 Apr;193(8):2070-1</Citation>
<ArticleIdList><ArticleId IdType="pubmed">21317323</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Microbiology. 2011 Jul;157(Pt 7):2033-41</Citation>
<ArticleIdList><ArticleId IdType="pubmed">21527469</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Nucleic Acids Res. 2011 Jul;39(Web Server issue):W347-52</Citation>
<ArticleIdList><ArticleId IdType="pubmed">21672955</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Nucleic Acids Res. 2011 Jul;39(Web Server issue):W339-46</Citation>
<ArticleIdList><ArticleId IdType="pubmed">21672958</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Appl Environ Microbiol. 2011 Oct;77(19):6867-77</Citation>
<ArticleIdList><ArticleId IdType="pubmed">21821766</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>FEBS Lett. 2012 Jan 20;586(2):132-6</Citation>
<ArticleIdList><ArticleId IdType="pubmed">22200572</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Front Biosci (Elite Ed). 2012 Jan 01;4:1246-54</Citation>
<ArticleIdList><ArticleId IdType="pubmed">22201950</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>J Bacteriol. 2012 May;194(9):2378-9</Citation>
<ArticleIdList><ArticleId IdType="pubmed">22493193</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Curr Microbiol. 2013 Mar;66(3):243-50</Citation>
<ArticleIdList><ArticleId IdType="pubmed">23143288</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Genome Announc. 2013 Apr 04;1(2):e0006613</Citation>
<ArticleIdList><ArticleId IdType="pubmed">23558530</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Nucleic Acids Res. 2013 Jul;41(Web Server issue):W204-12</Citation>
<ArticleIdList><ArticleId IdType="pubmed">23737449</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Methods Mol Biol. 2014;1079:155-70</Citation>
<ArticleIdList><ArticleId IdType="pubmed">24170401</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Bioinformatics. 2014 May 1;30(9):1312-3</Citation>
<ArticleIdList><ArticleId IdType="pubmed">24451623</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>PLoS One. 2014 Mar 20;9(3):e92486</Citation>
<ArticleIdList><ArticleId IdType="pubmed">24651513</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Genome Announc. 2014 Aug 07;2(4):null</Citation>
<ArticleIdList><ArticleId IdType="pubmed">25103757</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Appl Environ Microbiol. 2015 Jan;81(1):422-31</Citation>
<ArticleIdList><ArticleId IdType="pubmed">25362061</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Bioinformatics. 2015 Apr 15;31(8):1305-6</Citation>
<ArticleIdList><ArticleId IdType="pubmed">25481007</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Microb Biotechnol. 2015 Mar;8(2):281-95</Citation>
<ArticleIdList><ArticleId IdType="pubmed">25529983</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Nucleic Acids Res. 2015 Jul 1;43(W1):W237-43</Citation>
<ArticleIdList><ArticleId IdType="pubmed">25948579</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Appl Environ Microbiol. 2015 Nov;81(21):7525-32</Citation>
<ArticleIdList><ArticleId IdType="pubmed">26296725</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Proc Natl Acad Sci U S A. 2015 Sep 8;112(36):11341-6</Citation>
<ArticleIdList><ArticleId IdType="pubmed">26305955</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>PLoS One. 2015 Oct 27;10(10):e0141369</Citation>
<ArticleIdList><ArticleId IdType="pubmed">26505996</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Rapid Commun Mass Spectrom. 2016 Jul 15;30(13):1581-90</Citation>
<ArticleIdList><ArticleId IdType="pubmed">27321846</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>J Bacteriol. 1988 Dec;170(12):5662-8</Citation>
<ArticleIdList><ArticleId IdType="pubmed">2848009</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>FEMS Microbiol Rev. 1995 Aug;17(1-2):191-205</Citation>
<ArticleIdList><ArticleId IdType="pubmed">7669346</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Nature. 1997 Nov 20;390(6657):249-56</Citation>
<ArticleIdList><ArticleId IdType="pubmed">9384377</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Biochemistry. 1998 Feb 10;37(6):1585-95</Citation>
<ArticleIdList><ArticleId IdType="pubmed">9484229</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>J Bacteriol. 1998 Apr;180(8):2110-7</Citation>
<ArticleIdList><ArticleId IdType="pubmed">9555893</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>FEMS Microbiol Lett. 1999 Feb 1;171(1):1-9</Citation>
<ArticleIdList><ArticleId IdType="pubmed">9987836</ArticleId>
</ArticleIdList>
</Reference>
</ReferenceList>
</PubmedData>
</pubmed>
<affiliations><list><country><li>Arabie saoudite</li>
<li>Hongrie</li>
</country>
</list>
<tree><country name="Hongrie"><noRegion><name sortKey="B Ka, Bettina" sort="B Ka, Bettina" uniqKey="B Ka B" first="Bettina" last="B Ka">Bettina B Ka</name>
</noRegion>
<name sortKey="Kocsube, Sandor" sort="Kocsube, Sandor" uniqKey="Kocsube S" first="Sándor" last="Kocsubé">Sándor Kocsubé</name>
<name sortKey="Kredics, Laszl" sort="Kredics, Laszl" uniqKey="Kredics L" first="Lászl" last="Kredics">Lászl Kredics</name>
<name sortKey="Manczinger, Laszl" sort="Manczinger, Laszl" uniqKey="Manczinger L" first="Lászl" last="Manczinger">Lászl Manczinger</name>
<name sortKey="Munsterkotter, Martin" sort="Munsterkotter, Martin" uniqKey="Munsterkotter M" first="Martin" last="Münsterkötter">Martin Münsterkötter</name>
<name sortKey="Vagvolgyi, Csaba" sort="Vagvolgyi, Csaba" uniqKey="Vagvolgyi C" first="Csaba" last="Vágvölgyi">Csaba Vágvölgyi</name>
</country>
<country name="Arabie saoudite"><noRegion><name sortKey="Shine, Kadaikunnan" sort="Shine, Kadaikunnan" uniqKey="Shine K" first="Kadaikunnan" last="Shine">Kadaikunnan Shine</name>
</noRegion>
<name sortKey="Alharbi, Naiyf S" sort="Alharbi, Naiyf S" uniqKey="Alharbi N" first="Naiyf S" last="Alharbi">Naiyf S. Alharbi</name>
<name sortKey="Khaled, Jamal M" sort="Khaled, Jamal M" uniqKey="Khaled J" first="Jamal M" last="Khaled">Jamal M. Khaled</name>
<name sortKey="Vagvolgyi, Csaba" sort="Vagvolgyi, Csaba" uniqKey="Vagvolgyi C" first="Csaba" last="Vágvölgyi">Csaba Vágvölgyi</name>
</country>
</tree>
</affiliations>
</record>

Pour manipuler ce document sous Unix (Dilib)

EXPLOR_STEP=$WICRI_ROOT/Bois/explor/PhytophthoraV1/Data/Main/Exploration

HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000497 | SxmlIndent | more

HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 000497 | SxmlIndent | more

Pour mettre un lien sur cette page dans le réseau Wicri

{{Explor lien
   |wiki=    Bois
   |area=    PhytophthoraV1
   |flux=    Main
   |étape=   Exploration
   |type=    RBID
   |clé=     pubmed:30868269
   |texte=   Genome analysis of a Bacillus subtilis strain reveals genetic mutations determining biocontrol properties.
}}

Pour générer des pages wiki

HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i   -Sk "pubmed:30868269" \
       | HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd   \
       | NlmPubMed2Wicri -a PhytophthoraV1

This area was generated with Dilib version V0.6.38.
Data generation: Fri Nov 20 11:20:57 2020. Site generation: Wed Mar 6 16:48:20 2024

	Serveur d'exploration Phytophthora
	Attention, ce site est en cours de développement ! Attention, site généré par des moyens informatiques à partir de corpus bruts. Les informations ne sont donc pas validées.

Serveur d'exploration Phytophthora

Genome analysis of a Bacillus subtilis strain reveals genetic mutations determining biocontrol properties.

Genome analysis of a Bacillus subtilis strain reveals genetic mutations determining biocontrol properties.

Source :

Descripteurs français

English descriptors

Abstract

Links toward previous steps (curation, corpus...)

Le document en format XML

Pour manipuler ce document sous Unix (Dilib)

Pour mettre un lien sur cette page dans le réseau Wicri

Pour générer des pages wiki